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Hydrolysis of Extracellular Pyrophosphate increases in post-hemodialysis plasma

Daniel Azpiazu, Emilio González-Parra, Jesús Egido, Ricardo Villa-Bellosta

Sci Rep. 2018; 8: 11089. Published online 2018 Jul 23. doi: 10.1038/s41598-018-29432-4

PMCID:: PMC6056505

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Oral supplementation of inorganic pyrophosphate in pseudoxanthoma elasticum

Eszter Kozák, Krisztina Fülöp, Natália Tőkési, Nidhi Rao, Qiaoli Li, Sharon F. Terry, Jouni Uitto, Xiaoming Zhang, Cyrus Becker, András Váradi, Viola Pomozi

Exp Dermatol. Author manuscript; available in PMC 2022 Apr 4.

Published in final edited form as: Exp Dermatol. 2022 Apr; 31(4): 548–555. Published online 2021 Nov 17. doi: 10.1111/exd.14498

PMCID:: PMC8977233

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Mechanism and Inhibition of Human Methionine Adenosyltransferase 2A

Courtney N. Niland, Agnidipta Ghosh, Sean M. Cahill, Vern L. Schramm

Biochemistry. Author manuscript; available in PMC 2022 Mar 16.

Published in final edited form as: Biochemistry. 2021 Mar 16; 60(10): 791–801. Published online 2021 Mar 3. doi: 10.1021/acs.biochem.0c00998

PMCID:: PMC8315116

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Phosphate/Pyrophosphate and MV-related Proteins in Mineralisation: Discoveries from Mouse Models

Xiaoying Zhou, Yazhou Cui, Xiaoyan Zhou, Jinxiang Han

Int J Biol Sci. 2012; 8(6): 778–790. Published online 2012 Jun 1. doi: 10.7150/ijbs.4538

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Weighing the evidence for the roles of plasma versus local pyrophosphate in ectopic calcification disorders

Douglas Ralph, Michael Levine, José Luis Millán, Jouni Uitto, Qiaoli Li

J Bone Miner Res. Author manuscript; available in PMC 2023 Jul 24.

Published in final edited form as: J Bone Miner Res. 2023 Apr; 38(4): 457–463. Published online 2023 Mar 13. doi: 10.1002/jbmr.4791

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The inositol pyrophosphate metabolism of Dictyostelium discoideum does not regulate inorganic polyphosphate (polyP) synthesis

Yann Desfougères, Paloma Portela-Torres, Danye Qiu, Thomas M. Livermore, Robert K. Harmel, Filipy Borghi, Henning J. Jessen, Dorothea Fiedler, Adolfo Saiardi

Adv Biol Regul. 2022 Jan; 83: 100835. doi: 10.1016/j.jbior.2021.100835

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The InsP₇ phosphatase Siw14 regulates inositol pyrophosphate levels to control localization of the general stress response transcription factor Msn2

Elizabeth A. Steidle, Victoria A. Morrissette, Kotaro Fujimaki, Lucy Chong, Adam C. Resnick, Andrew P. Capaldi, Ronda J. Rolfes

J Biol Chem. 2020 Feb 14; 295(7): 2043–2056. Published online 2019 Dec 17. doi: 10.1074/jbc.RA119.012148

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Pseudoxanthoma Elasticum as a Paradigm of Heritable Ectopic Mineralization Disorders: Pathomechanisms and Treatment Development

Qiaoli Li, Koen van de Wetering, Jouni Uitto

Am J Pathol. 2019 Feb; 189(2): 216–225. doi: 10.1016/j.ajpath.2018.09.014

PMCID:: PMC6412714

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Saccharomyces cerevisiae Thg1 Uses 5′-Pyrophosphate Removal To Control Addition of Nucleotides to tRNA^His

Brian A. Smith, Jane E. Jackman

Biochemistry. 2014 Mar 4; 53(8): 1380–1391. Published online 2014 Feb 7. doi: 10.1021/bi4014648

PMCID:: PMC3985462

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Inorganic Pyrophosphate Deficiency Syndromes and Potential Treatments for Pathologic Tissue Calcification

Douglas Ralph, Koen van de Wetering, Jouni Uitto, Qiaoli Li

Am J Pathol. 2022 May; 192(5): 762–770. doi: 10.1016/j.ajpath.2022.01.012

PMCID:: PMC9088198

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The membrane protein ANKH is crucial for bone mechanical performance by mediating cellular export of citrate and ATP

Flora Szeri, Stefan Lundkvist, Sylvia Donnelly, Udo F. H. Engelke, Kyu Rhee, Charlene J. Williams, John P. Sundberg, Ron A. Wevers, Ryan E. Tomlinson, Robert S. Jansen, Koen van de Wetering

PLoS Genet. 2020 Jul; 16(7): e1008884. Published online 2020 Jul 8. doi: 10.1371/journal.pgen.1008884

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Isolation and Characterization of Chinese Standard Fulvic Acid Sub-fractions Separated from Forest Soil by Stepwise Elution with Pyrophosphate Buffer

Yingchen Bai, Fengchang Wu, Baoshan Xing, Wei Meng, Guolan Shi, Yan Ma, John P. Giesy

Sci Rep. 2015; 5: 8723. Published online 2015 Mar 4. doi: 10.1038/srep08723

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Arabidopsis Type I Proton-Pumping Pyrophosphatase Expresses Strongly in Phloem, Where It Is Required for Pyrophosphate Metabolism and Photosynthate Partitioning

Gaston A. Pizzio, Julio Paez-Valencia, Aswad S. Khadilkar, Kamesh Regmi, Araceli Patron-Soberano, Shangji Zhang, Jonathan Sanchez-Lares, Tara Furstenau, Jisheng Li, Concepcion Sanchez-Gomez, Pedro Valencia-Mayoral, Umesh P. Yadav, Brian G. Ayre, Roberto A. Gaxiola

Plant Physiol. 2015 Apr; 167(4): 1541–1553. Published online 2015 Feb 13. doi: 10.1104/pp.114.254342

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Determination of Single-Nucleotide Polymorphisms by Real-time Pyrophosphate DNA Sequencing

Anders Alderborn, Anna Kristofferson, Ulf Hammerling

Genome Res. 2000 Aug; 10(8): 1249–1258. doi: 10.1101/gr.10.8.1249

PMCID:: PMC310924

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Metabolic Determinants of Electrical Failure in Ex-Vivo Canine Model of Cardiac Arrest: Evidence for the Protective Role of Inorganic Pyrophosphate

Junko Shibayama, Tyson G. Taylor, Paul W. Venable, Nathaniel L. Rhodes, Ryan B. Gil, Mark Warren, Adam R. Wende, E. Dale Abel, James Cox, Kenneth W. Spitzer, Alexey V. Zaitsev

PLoS One. 2013; 8(3): e57821. Published online 2013 Mar 8. doi: 10.1371/journal.pone.0057821

PMCID:: PMC3592894

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Pyrophosphate modulates plant stress responses via SUMOylation

M Görkem Patir-Nebioglu, Zaida Andrés, Melanie Krebs, Fabian Fink, Katarzyna Drzewicka, Nicolas Stankovic-Valentin, Shoji Segami, Sebastian Schuck, Michael Büttner, Rüdiger Hell, Masayoshi Maeshima, Frauke Melchior, Karin Schumacher

eLife. 2019; 8: e44213. Published online 2019 Feb 20. doi: 10.7554/eLife.44213

Retraction in:: eLife. 2019; 8: e46993.

PMCID:: PMC6382351

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Atypical Glycolysis in Clostridium thermocellum

Jilai Zhou, Daniel G. Olson, D. Aaron Argyros, Yu Deng, Walter M. van Gulik, Johannes P. van Dijken, Lee R. Lynd

Appl Environ Microbiol. 2013 May; 79(9): 3000–3008. doi: 10.1128/AEM.04037-12

PMCID:: PMC3623140

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Effects of pH on the Production of Phosphate and Pyrophosphate by Matrix Vesicles' Biomimetics

Ana Maria S. Simão, Maytê Bolean, Marc F. Hoylaerts, José Luis Millán, Pietro Ciancaglini

Calcif Tissue Int. Author manuscript; available in PMC 2013 Sep 1.

Published in final edited form as: Calcif Tissue Int. 2013 Sep; 93(3): 222–232. Published online 2013 May 31. doi: 10.1007/s00223-013-9745-3

PMCID:: PMC3752608

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Inhibition and Mechanism of Plasmodium falciparum Hypoxanthine–Guanine–Xanthine Phosphoribosyltransferase

Yacoba V. T. Minnow, Kajitha Suthagar, Keith Clinch, Rodrigo G. Ducati, Agnidipta Ghosh, Joshua N. Buckler, Rajesh K. Harijan, Sean M. Cahill, Peter C. Tyler, Vern L. Schramm

ACS Chem Biol. Author manuscript; available in PMC 2022 Dec 22.

Published in final edited form as: ACS Chem Biol. 2022 Dec 16; 17(12): 3407–3419. Published online 2022 Nov 22. doi: 10.1021/acschembio.2c00546

PMCID:: PMC9772100

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Thermophilic Inorganic Pyrophosphatase Ton1914 from Thermococcus onnurineus NA1 Removes the Inhibitory Effect of Pyrophosphate

Yajing Li, Xue Yang, Renjun Gao

Int J Mol Sci. 2022 Nov; 23(21): 12735. Published online 2022 Oct 22. doi: 10.3390/ijms232112735

PMCID:: PMC9653972

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Figure 5Effects of ATP (Mg free) and pyrophosphate on channel activity

A, inside-out patch recordings in control intracellular solution containing 4 mm free [Mg²⁺] (top trace), intracellular solution plus 5 mm MgATP (second trace), magnesium-free intracellular solution (third trace), magnesium-free intracellular solution plus 5 mm ATP (fourth trace) and Mg-free intracellular solution plus 5 mm pyrophosphate (bottom trace). B, comparison of effects of 5 mm MgATP, Mg-free ATP and Mg-free pyrophosphate on channel activity. Relative NP_open was calculated using either Mg-containing intracellular solution as control (for MgATP) or Mg-free intracellular solution as control (for Mg-free ATP and pyrophosphate). Data are means (+s.e.m.). Effects of Mg-free ATP (n = 10) and pyrophosphate (n = 10) were not significant.

Modulation of TASK-like background potassium channels in rat arterial chemoreceptor cells by intracellular ATP and other nucleotides

J Physiol. 2007 Sep 1;583(Pt 2):521-536.
Figure 5

Nanotube emission energy response to charge accumulation. (a) ss(AT)₁₅-HiPco nanotubes introduced to 0.5 or 1 M sodium phosphate or potassium pyrophosphate. Nanotube emission energy change (meV) between ionic solutions and deionized water plotted as a function of emission energy (eV). (b) Emission energy change of nanotubes on HeLa cell membranes in a trypsinized state and a native state (red), and emission energy change between 1 M potassium pyrophosphate and deionized water (blue), as a function of nanotube emission energy. Error bars represent S.E.M, n = 3.

Cell Membrane Proteins Modulate the Carbon Nanotube Optical Bandgap via Surface Charge Accumulation

ACS Nano. ;10(1):499-506.
Fig. 7Cyclic voltammogram of MV (2.0 mM) in nitrogen-saturated sodium pyrophosphate buffer (pH 7.4) containing 30% w/w [EMlm][Me2PO4] and 0.2 M potassium chloride (red). Blue: in the absence of [EMlm][Me2PO4].

Visible-light-driven CO2 reduction to formate with a system of water-soluble zinc porphyrin and formate dehydrogenase in ionic liquid/aqueous media

RSC Adv. 2020 Nov 17;10(69):42354-42362.
Figure 2The impact of buffers and physical dispersion methods on viral yields.

(A) Viral yields from different buffers (Experiment 1A). PP, sodium pyrophosphate; KC, potassium citrate; AKC, amended potassium citrate. Each treatment was followed by sonication for physical dispersion. (B) Viral yields from different physical dispersion methods (Experiment 1B). VX, vortexing; BB, bead-beating; SC, sonication. Each replicate was in AKC buffer. An ^∗ denotes statistically significant difference (p < 0.05) within the soil type.

Optimization of viral resuspension methods for carbon-rich soils along a permafrost thaw gradient

PeerJ. 2016;4:e1999.